Thanks to the dealers bringing this to our attention this morning, you know who you are!
Toyota UK have made an announcement to dealerships across the UK regarding the CEL/VVT issue which is affecting several of our wonderful GT86's:
It appears that the root cause is the calibration (map/remap/flash/reflash), but an interim fix is/was to fit a modified VVT unit which doesn't upset the current/older ECU/calibration.

Toyota UK have made an announcement to dealerships across the UK regarding the CEL/VVT issue which is affecting several of our wonderful GT86's:
Toyota UK said:During this activity we have become aware of an issue which affects 36 vehicles, less than 4% of total vehicles sold. These vehicles have experienced rough running caused by the engine ECU restricting the operation of the VVTi Controller. The root cause of the issue is the relationship of the tolerances in VVTi Controller design and the ECU software. We can assure you that this does not damage the engine because as soon as the ECU detects that a sensor signal is out of specification it will protect the engine by inducing a fail-safe condition and, at the same time, illuminate the Malfunction Indicator Lamp to inform the driver.
To affect a permanent resolution to this issue TMC have been developing an upgrade to the ECU software but this has taken time to bring to market due to the need for it to be homologated. Whilst this process has been on-going VVTi Controllers manufactured to a tighter specification have been available to fit to those vehicles experiencing the rough running condition.
We are pleased to confirm that the software homologation has now been completed and that it will be available on Thursday 25th October 2012. As this is now so close and a failure typically occurs within the first 2,000 miles we have taken the decision to hold deliveries of new cars until the software upgrade has taken place.
It appears that the root cause is the calibration (map/remap/flash/reflash), but an interim fix is/was to fit a modified VVT unit which doesn't upset the current/older ECU/calibration.